Publications
Nathan Tessema Ersumo; Cem Yalcin; Nick Antipa; Nicolas C Pégard; Laura Waller; Daniel Lopez; Rikky Muller
Design framework for high-speed 3D scanning tools and development of an axial focusing micromirror-based array Proceedings Article
In: MOEMS and Miniaturized Systems XIX, pp. 1129303, International Society for Optics and Photonics 2020.
Links | BibTeX | Tags: 3D imaging, digital holography, experimental design
@inproceedings{ersumo2020design,
title = {Design framework for high-speed 3D scanning tools and development of an axial focusing micromirror-based array},
author = { Nathan Tessema Ersumo and Cem Yalcin and Nick Antipa and Nicolas C Pégard and Laura Waller and Daniel Lopez and Rikky Muller},
url = {https://doi.org/10.1117/12.2550994},
doi = {10.1117/12.2550994},
year = {2020},
date = {2020-02-28},
booktitle = {MOEMS and Miniaturized Systems XIX},
volume = {11293},
pages = {1129303},
organization = {International Society for Optics and Photonics},
keywords = {3D imaging, digital holography, experimental design},
pubstate = {published},
tppubtype = {inproceedings}
}
Matthew Wells; Jesus Deloya Garcia; Shwetadwip Chowdhury; Michael Kellman; Laura Waller; Rachel Pepper
Characterizing the feeding current of sessile microorganisms using digital holography Proceedings Article
In: APS Division of Fluid Dynamics , 2019.
Abstract | Links | BibTeX | Tags: 3D imaging, digital holography, phase imaging
@inproceedings{wells2019characterizing,
title = {Characterizing the feeding current of sessile microorganisms using digital holography},
author = { Matthew Wells and Jesus Deloya Garcia and Shwetadwip Chowdhury and Michael Kellman and Laura Waller and Rachel Pepper},
url = {https://ui.adsabs.harvard.edu/abs/2019APS..DFDN05082W/abstract},
year = {2019},
date = {2019-11-01},
booktitle = {APS Division of Fluid Dynamics },
journal = {APS},
volume = {Fall 2019},
number = {NP05--082},
abstract = {Microscopic sessile suspension feeders (MSSFs) are single-celled organisms that live attached to surfaces in freshwater and marine environments. MSSFs generate a feeding current to consume bacteria and debris. They play a vital role in aquatic ecosystems of moving carbon up the food chain. Therefore, characterizing MSSF feeding flow is important for understanding their role in the environment. MSSF feeding flows have only been viewed in 2D and often with samples pressed between two coverslips that distort the flow. However, calculations predict the feeding current forms recirculating eddies when the MSSF body is oriented perpendicular to the surface of attachment. These eddies reduce feeding rate, and as the MSSF tends toward a parallel orientation it is predicted that the eddies disappear. Here we test those predictions by measuring 3D flow around individual Vorticella. Vorticellaare a common and representative MSSF. We use digital holography to record 3D videos of Vorticella in water seeded with 5-10 μm spherical flow tracers. We then use Particle Tracking Velocimetry to find fluid velocity from particle trajectories. },
keywords = {3D imaging, digital holography, phase imaging},
pubstate = {published},
tppubtype = {inproceedings}
}
Thomas Zimmerman; Nick Antipa; Daniel Elnatan; Alessio Murru; Sujoy Biswas; Vito Pastore; Mayara Bonani; Laura Waller; Jennifer Fung; Gianni Fenu; others
Stereo in-line holographic digital microscope Proceedings Article
In: Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXVI, pp. 1088315, International Society for Optics and Photonics 2019.
Links | BibTeX | Tags: 3D imaging, digital holography, lensless imaging, on-chip
@inproceedings{zimmerman2019stereo,
title = {Stereo in-line holographic digital microscope},
author = { Thomas Zimmerman and Nick Antipa and Daniel Elnatan and Alessio Murru and Sujoy Biswas and Vito Pastore and Mayara Bonani and Laura Waller and Jennifer Fung and Gianni Fenu and others},
url = {https://doi.org/10.1117/12.2509033},
doi = {10.1117/12.2509033},
year = {2019},
date = {2019-02-21},
booktitle = {Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXVI},
volume = {10883},
pages = {1088315},
organization = {International Society for Optics and Photonics},
keywords = {3D imaging, digital holography, lensless imaging, on-chip},
pubstate = {published},
tppubtype = {inproceedings}
}
Alan R Mardinly; Ian Antón Oldenburg; Nicolas C Pégard; Savitha Sridharan; Evan H Lyall; Kirill Chesnov; Stephen G Brohawn; Laura Waller; Hillel Adesnik
Precise multimodal optical control of neural ensemble activity Journal Article
In: Nature neuroscience, vol. 21, no. 6, pp. 881–893, 2018.
Links | BibTeX | Tags: 3D imaging, digital holography, multiphoton, neural imaging
@article{mardinly2018precise,
title = {Precise multimodal optical control of neural ensemble activity},
author = { Alan R Mardinly and Ian Antón Oldenburg and Nicolas C Pégard and Savitha Sridharan and Evan H Lyall and Kirill Chesnov and Stephen G Brohawn and Laura Waller and Hillel Adesnik},
url = {https://doi.org/10.1038/s41593-018-0139-8},
doi = {10.1038/s41593-018-0139-8},
year = {2018},
date = {2018-04-30},
journal = {Nature neuroscience},
volume = {21},
number = {6},
pages = {881--893},
publisher = {Nature Publishing Group},
keywords = {3D imaging, digital holography, multiphoton, neural imaging},
pubstate = {published},
tppubtype = {article}
}
Nicolas C Pégard; Alan R Mardinly; Ian Antón Oldenburg; Savitha Sridharan; Laura Waller; Hillel Adesnik
Three-dimensional scanless holographic optogenetics with temporal focusing (3D-SHOT) Journal Article
In: Nature communications, vol. 8, no. 1, pp. 1–14, 2017.
Links | BibTeX | Tags: 3D imaging, digital holography, fluorescence imaging, neural imaging
@article{pegard2017three,
title = {Three-dimensional scanless holographic optogenetics with temporal focusing (3D-SHOT)},
author = { Nicolas C Pégard and Alan R Mardinly and Ian Antón Oldenburg and Savitha Sridharan and Laura Waller and Hillel Adesnik},
url = {https://doi.org/10.1038/s41467-017-01031-3},
doi = {10.1038/s41467-017-01031-3},
year = {2017},
date = {2017-10-31},
journal = {Nature communications},
volume = {8},
number = {1},
pages = {1--14},
publisher = {Nature Publishing Group},
keywords = {3D imaging, digital holography, fluorescence imaging, neural imaging},
pubstate = {published},
tppubtype = {article}
}
Jingzhao Zhang; Nicolas C Pégard; Jingshan Zhong; Hillel Adesnik; Laura Waller
3D computer-generated holography by non-convex optimization Journal Article
In: Optica, vol. 4, no. 10, pp. 1306–1313, 2017.
Links | BibTeX | Tags: 3D imaging, algorithms, digital holography, fluorescence imaging, neural imaging
@article{zhang20173d,
title = {3D computer-generated holography by non-convex optimization},
author = { Jingzhao Zhang and Nicolas C Pégard and Jingshan Zhong and Hillel Adesnik and Laura Waller},
url = {https://doi.org/10.1364/OPTICA.4.001306},
doi = {10.1364/OPTICA.4.001306},
year = {2017},
date = {2017-10-19},
journal = {Optica},
volume = {4},
number = {10},
pages = {1306--1313},
publisher = {Optical Society of America},
keywords = {3D imaging, algorithms, digital holography, fluorescence imaging, neural imaging},
pubstate = {published},
tppubtype = {article}
}
Laura Waller; Jungik Kim; Yang Shao-Horn; George Barbastathis
Interferometric tomography of fuel cells for monitoring membrane water content Journal Article
In: Optics express, vol. 17, no. 17, pp. 14806–14816, 2009.
Links | BibTeX | Tags: digital holography, tomography
@article{waller2009interferometric,
title = {Interferometric tomography of fuel cells for monitoring membrane water content},
author = { Laura Waller and Jungik Kim and Yang Shao-Horn and George Barbastathis},
url = {https://doi.org/10.1364/OE.17.014806},
doi = {10.1364/OE.17.014806},
year = {2009},
date = {2009-08-06},
journal = {Optics express},
volume = {17},
number = {17},
pages = {14806--14816},
publisher = {Optical Society of America},
keywords = {digital holography, tomography},
pubstate = {published},
tppubtype = {article}
}