Publications
Michael Kellman; Kevin Zhang; Eric Markley; Jon Tamir; Emrah Bostan; Michael Lustig; Laura Waller
Memory-efficient Learning for Large-Scale Computational Imaging Journal Article
In: IEEE Transactions on Computational Imaging, vol. 6, pp. 1403-1414, 2020.
Links | BibTeX | Tags: algorithms, computational imaging, experimental design, learning-based, LED array, memory efficient, memory-efficient, physics-based
@article{kellman2020memory,
title = {Memory-efficient Learning for Large-Scale Computational Imaging},
author = { Michael Kellman and Kevin Zhang and Eric Markley and Jon Tamir and Emrah Bostan and Michael Lustig and Laura Waller},
url = {https://ieeexplore.ieee.org/document/9204455},
doi = {10.1109/TCI.2020.3025735},
year = {2020},
date = {2020-10-14},
journal = {IEEE Transactions on Computational Imaging},
volume = {6},
pages = {1403-1414},
keywords = {algorithms, computational imaging, experimental design, learning-based, LED array, memory efficient, memory-efficient, physics-based},
pubstate = {published},
tppubtype = {article}
}
Michael Kellman
Physics-based Learning for Large-scale Computational Imaging PhD Thesis
EECS Department, University of California, Berkeley, 2020.
Abstract | Links | BibTeX | Tags: algorithms, computational imaging, experimental design, learning-based, LED array, memory efficient, memory-efficient, physics-based
@phdthesis{Kellman:EECS-2020-167,
title = {Physics-based Learning for Large-scale Computational Imaging},
author = {Michael Kellman},
url = {http://www2.eecs.berkeley.edu/Pubs/TechRpts/2020/EECS-2020-167.html},
year = {2020},
date = {2020-08-01},
number = {UCB/EECS-2020-167},
school = {EECS Department, University of California, Berkeley},
abstract = {In computational imaging systems (e.g. tomographic systems, computational optics, magnetic resonance imaging) the acquisition of data and reconstruction of images are co-designed to retrieve information which is not traditionally accessible. The performance of such systems is characterized by how information is encoded to (forward process) and decoded from (inverse problem) the measurements. Recently, critical aspects of these systems, such as their signal prior, have been optimized using deep neural networks formed from unrolling the iterations of a physics-based image reconstruction.
In this dissertation, I will detail my work, physics-based learned design, to optimize the performance of the entire computational imaging system by jointly learning aspects of its experimental design and computational reconstruction. As an application, I introduce how the LED-array microscope performs super-resolved quantitative phase imaging and demonstrate how physics-based learning can optimize a reduced set of measurements without sacrificing performance to enable the imaging of live fast moving biology.
In this dissertation's latter half, I will discuss how to overcome some of the computational challenges encountered in applying physics-based learning concepts to large-scale computational imaging systems. I will describe my work, memory-efficient learning, that makes physics-based learning for large-scale systems feasible on commercially-available graphics processing units. I demonstrate this method on two large-scale real-world systems: 3D multi-channel compressed sensing MRI and super-resolution optical microscopy.},
keywords = {algorithms, computational imaging, experimental design, learning-based, LED array, memory efficient, memory-efficient, physics-based},
pubstate = {published},
tppubtype = {phdthesis}
}
In this dissertation, I will detail my work, physics-based learned design, to optimize the performance of the entire computational imaging system by jointly learning aspects of its experimental design and computational reconstruction. As an application, I introduce how the LED-array microscope performs super-resolved quantitative phase imaging and demonstrate how physics-based learning can optimize a reduced set of measurements without sacrificing performance to enable the imaging of live fast moving biology.
In this dissertation's latter half, I will discuss how to overcome some of the computational challenges encountered in applying physics-based learning concepts to large-scale computational imaging systems. I will describe my work, memory-efficient learning, that makes physics-based learning for large-scale systems feasible on commercially-available graphics processing units. I demonstrate this method on two large-scale real-world systems: 3D multi-channel compressed sensing MRI and super-resolution optical microscopy.
Michael Kellman; Emrah Bostan; Nicole A Repina; Laura Waller
Physics-based learned design: Optimized coded-illumination for quantitative phase imaging Journal Article
In: IEEE Transactions on Computational Imaging, vol. 5, no. 3, pp. 344–353, 2019.
Links | BibTeX | Tags: algorithm, experimental design, learning-based, phase imaging, physics-based
@article{kellman2019physics,
title = {Physics-based learned design: Optimized coded-illumination for quantitative phase imaging},
author = { Michael Kellman and Emrah Bostan and Nicole A Repina and Laura Waller},
url = {https://ieeexplore.ieee.org/document/8667888},
year = {2019},
date = {2019-09-01},
journal = {IEEE Transactions on Computational Imaging},
volume = {5},
number = {3},
pages = {344--353},
publisher = {IEEE},
keywords = {algorithm, experimental design, learning-based, phase imaging, physics-based},
pubstate = {published},
tppubtype = {article}
}
Hsiou-Yuan Liu
Optical Phase Space Measurements and Applications to 3D Imaging and Light Scattering PhD Thesis
University of California, Berkeley, 2018, ISBN: 978-0-438-65426-6.
Links | BibTeX | Tags: 3D imaging, experimental design, fluorescence imaging, multiple-scattering, phase space
@phdthesis{liu2018optical,
title = {Optical Phase Space Measurements and Applications to 3D Imaging and Light Scattering},
author = {Hsiou-Yuan Liu},
url = {https://search-proquest-com.libproxy.berkeley.edu/docview/2137546920?accountid=14496},
isbn = {978-0-438-65426-6},
year = {2018},
date = {2018-05-01},
school = {University of California, Berkeley},
keywords = {3D imaging, experimental design, fluorescence imaging, multiple-scattering, phase space},
pubstate = {published},
tppubtype = {phdthesis}
}
Stuart Sherwin; Andrew Neureuther; Patrick Naulleau
Modeling high-efficiency extreme ultraviolet etched multilayer phase-shift masks Journal Article
In: Journal of Micro/Nanolithography, MEMS, and MOEMS, vol. 16, no. 4, pp. 1 – 15, 2017.
Links | BibTeX | Tags: EUV, experimental design, lithography, optical models
@article{10.1117/1.JMM.16.4.041012,
title = {Modeling high-efficiency extreme ultraviolet etched multilayer phase-shift masks},
author = {Stuart Sherwin and Andrew Neureuther and Patrick Naulleau},
url = {https://doi.org/10.1117/1.JMM.16.4.041012},
doi = {10.1117/1.JMM.16.4.041012},
year = {2017},
date = {2017-12-09},
journal = {Journal of Micro/Nanolithography, MEMS, and MOEMS},
volume = {16},
number = {4},
pages = {1 -- 15},
publisher = {SPIE},
keywords = {EUV, experimental design, lithography, optical models},
pubstate = {published},
tppubtype = {article}
}
Laura Waller; Zachary F Phillips; Michael Chen
Optical phase retrieval systems using color-multiplexed illumination Patent
2017, (US Patent App. 16/155,077).
Links | BibTeX | Tags: color-multiplexed, DPC, experimental design, phase imaging
@patent{waller2019optical,
title = {Optical phase retrieval systems using color-multiplexed illumination},
author = { Laura Waller and Zachary F Phillips and Michael Chen},
url = {https://patents.google.com/patent/WO2017181044A1/en},
year = {2017},
date = {2017-04-14},
note = {US Patent App. 16/155,077},
keywords = {color-multiplexed, DPC, experimental design, phase imaging},
pubstate = {published},
tppubtype = {patent}
}
Roarke Horstmeyer; Rainer Heintzmann; Gabriel Popescu; Laura Waller; Changhuei Yang
Standardizing the resolution claims for coherent microscopy Journal Article
In: Nature Photonics, vol. 10, no. 2, pp. 68–71, 2016.
Links | BibTeX | Tags: experimental design, high-resolution
@article{horstmeyer2016standardizing,
title = {Standardizing the resolution claims for coherent microscopy},
author = { Roarke Horstmeyer and Rainer Heintzmann and Gabriel Popescu and Laura Waller and Changhuei Yang},
url = {https://doi.org/10.1038/nphoton.2015.279},
doi = {10.1038/nphoton.2015.279},
year = {2016},
date = {2016-01-29},
journal = {Nature Photonics},
volume = {10},
number = {2},
pages = {68--71},
publisher = {Nature Publishing Group},
keywords = {experimental design, high-resolution},
pubstate = {published},
tppubtype = {article}
}
Yongbing Zhang; Weixin Jiang; Lei Tian; Laura Waller; Qionghai Dai
Self-learning based Fourier ptychographic microscopy Journal Article
In: Optics express, vol. 23, no. 14, pp. 18471–18486, 2015.
Links | BibTeX | Tags: experimental design, FPM, high-resolution
@article{zhang2015self,
title = {Self-learning based Fourier ptychographic microscopy},
author = { Yongbing Zhang and Weixin Jiang and Lei Tian and Laura Waller and Qionghai Dai},
url = {https://doi.org/10.1364/OE.23.018471},
doi = {10.1364/OE.23.018471},
year = {2015},
date = {2015-07-08},
journal = {Optics express},
volume = {23},
number = {14},
pages = {18471--18486},
publisher = {Optical Society of America},
keywords = {experimental design, FPM, high-resolution},
pubstate = {published},
tppubtype = {article}
}
Lei Tian; Xiao Li; Kannan Ramchandran; Laura Waller
Multiplexed coded illumination for Fourier Ptychography with an LED array microscope Journal Article
In: Biomedical optics express, vol. 5, no. 7, pp. 2376–2389, 2014.
Links | BibTeX | Tags: algorithms, experimental design, FPM, high-resolution, high-throughput, LED array, multiplexed illumination
@article{tian2014multiplexed,
title = {Multiplexed coded illumination for Fourier Ptychography with an LED array microscope},
author = { Lei Tian and Xiao Li and Kannan Ramchandran and Laura Waller},
url = {https://doi.org/10.1364/BOE.5.002376},
doi = {10.1364/BOE.5.002376},
year = {2014},
date = {2014-06-19},
journal = {Biomedical optics express},
volume = {5},
number = {7},
pages = {2376--2389},
publisher = {Optical Society of America},
keywords = {algorithms, experimental design, FPM, high-resolution, high-throughput, LED array, multiplexed illumination},
pubstate = {published},
tppubtype = {article}
}
Zhong Jingshan; Rene A Claus; Justin Dauwels; Lei Tian; Laura Waller
Transport of intensity phase imaging by intensity spectrum fitting of exponentially spaced defocus planes Journal Article
In: Optics express, vol. 22, no. 9, pp. 10661–10674, 2014.
Links | BibTeX | Tags: experimental design, phase from defocus, phase imaging, TIE
@article{jingshan2014transport,
title = {Transport of intensity phase imaging by intensity spectrum fitting of exponentially spaced defocus planes},
author = { Zhong Jingshan and Rene A Claus and Justin Dauwels and Lei Tian and Laura Waller},
url = {https://doi.org/10.1364/OE.22.010661},
doi = {10.1364/OE.22.010661},
year = {2014},
date = {2014-04-25},
journal = {Optics express},
volume = {22},
number = {9},
pages = {10661--10674},
publisher = {Optical Society of America},
keywords = {experimental design, phase from defocus, phase imaging, TIE},
pubstate = {published},
tppubtype = {article}
}
Laura Waller; Guohai Situ; Jason W Fleischer
Phase-space measurement and coherence synthesis of optical beams Journal Article
In: Nature Photonics, vol. 6, no. 7, pp. 474, 2012.
Links | BibTeX | Tags: experimental design, partial coherence, phase space
@article{waller2012phase,
title = {Phase-space measurement and coherence synthesis of optical beams},
author = { Laura Waller and Guohai Situ and Jason W Fleischer},
url = {https://www.nature.com/articles/nphoton.2012.144},
doi = {10.1038/nphoton.2012.144},
year = {2012},
date = {2012-06-24},
journal = {Nature Photonics},
volume = {6},
number = {7},
pages = {474},
publisher = {Nature Publishing Group},
keywords = {experimental design, partial coherence, phase space},
pubstate = {published},
tppubtype = {article}
}
Emanuele Uccelli; Laura Waller; Max Bichler; Gerhard Abstreiter; Anna Fontcuberta i Morral
Optical properties of InAs quantum dot array ensembles with predetermined lateral sizes from 20 to 40 nm Journal Article
In: Japanese Journal of Applied Physics, vol. 49, no. 4R, pp. 045201, 2010.
Links | BibTeX | Tags: experimental design
@article{uccelli2010optical,
title = {Optical properties of InAs quantum dot array ensembles with predetermined lateral sizes from 20 to 40 nm},
author = { Emanuele Uccelli and Laura Waller and Max Bichler and Gerhard Abstreiter and Anna Fontcuberta i Morral},
url = {https://doi.org/10.1143/JJAP.49.045201},
doi = {10.1143/JJAP.49.045201},
year = {2010},
date = {2010-04-20},
journal = {Japanese Journal of Applied Physics},
volume = {49},
number = {4R},
pages = {045201},
publisher = {IOP Publishing},
keywords = {experimental design},
pubstate = {published},
tppubtype = {article}
}
Chih-Hao Chang; Laura Waller; George Barbastathis
Design and optimization of broadband wide-angle antireflection structures for binary diffractive optics Journal Article
In: Optics letters, vol. 35, no. 7, pp. 907–909, 2010.
Links | BibTeX | Tags: experimental design, optical models
@article{chang2010design,
title = {Design and optimization of broadband wide-angle antireflection structures for binary diffractive optics},
author = { Chih-Hao Chang and Laura Waller and George Barbastathis},
url = {https://doi.org/10.1364/OL.35.000907},
doi = {10.1364/OL.35.000907},
year = {2010},
date = {2010-03-18},
journal = {Optics letters},
volume = {35},
number = {7},
pages = {907--909},
publisher = {Optical Society of America},
keywords = {experimental design, optical models},
pubstate = {published},
tppubtype = {article}
}
Laura Waller
Feedback loop design and experimental testing for integrated optics with micro-mechanical tuning Masters Thesis
Massachusetts Institute of Technology, 2005.
Links | BibTeX | Tags: experimental design
@mastersthesis{waller2005feedback,
title = {Feedback loop design and experimental testing for integrated optics with micro-mechanical tuning},
author = { Laura Waller},
url = {http://hdl.handle.net/1721.1/33383},
year = {2005},
date = {2005-05-19},
school = {Massachusetts Institute of Technology},
keywords = {experimental design},
pubstate = {published},
tppubtype = {mastersthesis}
}