Michael Chen

@article{bostan2020deep,

title = {Deep Phase Decoder: Self-calibrating phase microscopy with an untrained deep neural network},

author = { Emrah Bostan and Reinhard Heckel and Michael Chen and Michael Kellman and Laura Waller},

url = {https://doi.org/10.1364/OPTICA.389314

https://arxiv.org/abs/2001.09803},

doi = {10.1364/OPTICA.389314},

year  = {2020},

date = {2020-05-21},

journal = {Optica},

volume = {7},

number = {6},

pages = {559-562},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Chen:20,

title = {Multi-layer Born multiple-scattering model for 3D phase microscopy},

author = {Michael Chen and David Ren and Hsiou-Yuan Liu and Shwetadwip Chowdhury and Laura Waller},

url = {http://www.osapublishing.org/optica/abstract.cfm?URI=optica-7-5-394},

doi = {10.1364/OPTICA.383030},

year  = {2020},

date = {2020-05-01},

journal = {Optica},

volume = {7},

number = {5},

pages = {394--403},

publisher = {OSA},

abstract = {We propose an accurate and computationally efficient 3D scattering model, multi-layer Born (MLB), and use it to recover the 3D refractive index (RI) of thick biological samples. For inverse problems recovering the complex field of thick samples, weak scattering models (e.g., first Born) may fail or underestimate the RI, especially with a large index contrast. Multi-slice (MS) beam propagation methods model multiple scattering to provide more realistic reconstructions; however, MS does not properly account for highly oblique scattering, nor does it model backward scattering. Our proposed MLB model uses a first Born model at each of many slices, accurately capturing the oblique scattering effects and estimating the backward scattering process. When used in conjunction with an inverse solver, the model provides more accurate RI reconstructions for high-resolution phase tomography. Importantly, MLB retains a reasonable computation time that is critical for practical implementation with iterative inverse algorithms.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{ren2020multiple,

title = {A multiple scattering algorithm for three dimensional phase contrast atomic electron tomography},

author = { David Ren and Colin Ophus and Michael Chen and Laura Waller},

url = {https://www.sciencedirect.com/science/article/pii/S030439911930052X},

year  = {2020},

date = {2020-01-01},

journal = {Ultramicroscopy},

volume = {208},

pages = {112860},

publisher = {North-Holland},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{chowdhury2019high,

title = {High-resolution 3D refractive index microscopy of multiple-scattering samples from intensity images},

author = { Shwetadwip Chowdhury and Michael Chen and Regina Eckert and David Ren and Fan Wu and Nicole A Repina and Laura Waller},

url = {https://doi.org/10.1364/OPTICA.6.001211},

doi = {10.1364/OPTICA.6.001211},

year  = {2019},

date = {2019-09-16},

journal = {Optica},

volume = {6},

number = {9},

pages = {1211--1219},

publisher = {Optical Society of America},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{ophus20193d,

title = {3D Imaging Using HAADF-STEM and HRTEM Atomic Electron Tomography},

author = { Colin Ophus and David Ren and Jihan Zhou and Hannah Devyldere and Michael Chen and Philipp M Pelz and Peter Ercius and Jianwei Miao and Mary C Scott and Laura Waller},

url = {https://doi.org/10.1017/S1431927619002708},

doi = {10.1017/S1431927619002708},

year  = {2019},

date = {2019-08-05},

journal = {Microscopy and Microanalysis},

volume = {25},

number = {S2},

pages = {394--395},

publisher = {Cambridge University Press},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{chen2018quantitative,

title = {Quantitative differential phase contrast (DPC) microscopy with computational aberration correction},

author = { Michael Chen and Zachary F Phillips and Laura Waller},

url = {https://doi.org/10.1364/OE.26.032888},

doi = {10.1364/OE.26.032888},

year  = {2018},

date = {2018-11-30},

journal = {Optics express},

volume = {26},

number = {25},

pages = {32888--32899},

publisher = {Optical Society of America},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{kellman2018motionb,

title = {Motion-resolved quantitative phase imaging},

author = { Michael Kellman and Michael Chen and Zachary F Phillips and Michael Lustig and Laura Waller},

url = {https://doi.org/10.1364/BOE.9.005456},

doi = {10.1364/BOE.9.005456},

year  = {2018},

date = {2018-10-15},

journal = {Biomedical optics express},

volume = {9},

number = {11},

pages = {5456--5466},

publisher = {Optical Society of America},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{ophus2018linear,

title = {Linear and Nonlinear Reconstruction Algorithms for Atomic-Resolution Tomography Using Phase Contrast Electron Microscopy},

author = { Colin Ophus and David Ren and Michael Chen and Catherine Groschner and Mary C Scott and Laura Waller},

url = {https://doi.org/10.1017/S1431927618001046},

doi = {10.1017/S1431927618001046},

year  = {2018},

date = {2018-08-01},

journal = {Microscopy and Microanalysis},

volume = {24},

number = {S1},

pages = {110--111},

publisher = {Cambridge University Press},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{phillips2017single,

title = {Single-shot quantitative phase microscopy with color-multiplexed differential phase contrast (cDPC)},

author = { Zachary F Phillips and Michael Chen and Laura Waller},

url = { https://doi.org/10.1371/journal.pone.0171228

},

doi = {10.1371/journal.pone.0171228},

year  = {2017},

date = {2017-02-02},

journal = {PloS one},

volume = {12},

number = {2},

publisher = {Public Library of Science},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{chen20163d,

title = {3D differential phase contrast microscopy},

author = { Michael Chen and Lei Tian and Laura Waller},

url = {https://doi.org/10.1364/BOE.7.003940},

year  = {2016},

date = {2016-10-01},

journal = {Biomedical Optics Express},

volume = {7},

number = {10},

pages = {3940--3950},

publisher = {Optical Society of America},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{yeh2015experimental,

title = {Experimental robustness of Fourier ptychography phase retrieval algorithms},

author = { Li-Hao Yeh and Jonathan Dong and Jingshan Zhong and Lei Tian and Michael Chen and Gongguo Tang and Mahdi Soltanolkotabi and Laura Waller},

url = {https://doi.org/10.1364/OE.23.033214},

doi = {10.1364/OE.23.033214},

year  = {2015},

date = {2015-12-16},

journal = {Optics express},

volume = {23},

number = {26},

pages = {33214--33240},

publisher = {Optical Society of America},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{tian2015computational,

title = {Computational illumination for high-speed in vitro Fourier ptychographic microscopy},

author = { Lei Tian and Ziji Liu and Li-Hao Yeh and Michael Chen and Jingshan Zhong and Laura Waller},

url = {https://doi.org/10.1364/OPTICA.2.000904},

doi = {10.1364/OPTICA.2.000904},

year  = {2015},

date = {2015-10-14},

journal = {Optica},

volume = {2},

number = {10},

pages = {904--911},

publisher = {Optical Society of America},

keywords = {},

pubstate = {published},

tppubtype = {article}

}