Publications

@article{zhong2016nonlinear,

title = {Nonlinear optimization algorithm for partially coherent phase retrieval and source recovery},

author = { Jingshan Zhong and Lei Tian and Paroma Varma and Laura Waller},

url = {https://doi.org/10.1109/TCI.2016.2571669},

doi = {10.1109/TCI.2016.2571669},

year  = {2016},

date = {2016-05-23},

journal = {IEEE Transactions on Computational Imaging},

volume = {2},

number = {3},

pages = {310--322},

publisher = {IEEE},

keywords = {algorithms, LED array, nonlinear optimization, partial coherence, phase from defocus, phase imaging},

pubstate = {published},

tppubtype = {article}

}

@article{pegard2016compressive,

title = {Compressive light-field microscopy for 3D neural activity recording},

author = { Nicolas C Pégard and Hsiou-Yuan Liu and Nick Antipa and Maximillian Gerlock and Hillel Adesnik and Laura Waller},

url = {https://doi.org/10.1364/OPTICA.3.000517},

doi = {10.1364/OPTICA.3.000517},

year  = {2016},

date = {2016-05-12},

journal = {Optica},

volume = {3},

number = {5},

pages = {517--524},

publisher = {Optical Society of America},

keywords = {light-field microscopy, neural imaging},

pubstate = {published},

tppubtype = {article}

}

@article{adesnik2016new,

title = {New Approaches and Insights into Cortical Microcircuits},

author = { Hillel Adesnik and Alan R Mardinly and Nicolas C Pegard and Ian Anton Oldenburg and Laura Waller},

url = {https://www.fasebj.org/doi/abs/10.1096/fasebj.30.1_supplement.371.1},

doi = {10.1096/fasebj.30.1_supplement.371.1},

year  = {2016},

date = {2016-04-01},

journal = {The FASEB Journal},

volume = {30},

number = {1_supplement},

pages = {371--1},

publisher = {The Federation of American Societies for Experimental Biology},

keywords = {fluorescence imaging, multiphoton, neural imaging},

pubstate = {published},

tppubtype = {article}

}

@article{horstmeyer2016standardizing,

title = {Standardizing the resolution claims for coherent microscopy},

author = { Roarke Horstmeyer and Rainer Heintzmann and Gabriel Popescu and Laura Waller and Changhuei Yang},

url = {https://doi.org/10.1038/nphoton.2015.279},

doi = {10.1038/nphoton.2015.279},

year  = {2016},

date = {2016-01-29},

journal = {Nature Photonics},

volume = {10},

number = {2},

pages = {68--71},

publisher = {Nature Publishing Group},

keywords = {experimental design, high-resolution},

pubstate = {published},

tppubtype = {article}

}

@article{yeh2015experimental,

title = {Experimental robustness of Fourier ptychography phase retrieval algorithms},

author = { Li-Hao Yeh and Jonathan Dong and Jingshan Zhong and Lei Tian and Michael Chen and Gongguo Tang and Mahdi Soltanolkotabi and Laura Waller},

url = {https://doi.org/10.1364/OE.23.033214},

doi = {10.1364/OE.23.033214},

year  = {2015},

date = {2015-12-16},

journal = {Optics express},

volume = {23},

number = {26},

pages = {33214--33240},

publisher = {Optical Society of America},

keywords = {algorithms, FPM, high-resolution, high-throughput, LED array, phase imaging},

pubstate = {published},

tppubtype = {article}

}

@article{tian2015computational,

title = {Computational illumination for high-speed in vitro Fourier ptychographic microscopy},

author = { Lei Tian and Ziji Liu and Li-Hao Yeh and Michael Chen and Jingshan Zhong and Laura Waller},

url = {https://doi.org/10.1364/OPTICA.2.000904},

doi = {10.1364/OPTICA.2.000904},

year  = {2015},

date = {2015-10-14},

journal = {Optica},

volume = {2},

number = {10},

pages = {904--911},

publisher = {Optical Society of America},

keywords = {FPM, high-resolution, high-throughput, in vitro imaging, LED array, phase imaging},

pubstate = {published},

tppubtype = {article}

}

@article{claus2015quantitative,

title = {Quantitative phase retrieval with arbitrary pupil and illumination},

author = { Rene A Claus and Patrick P Naulleau and Andrew R Neureuther and Laura Waller},

url = {https://doi.org/10.1364/OE.23.026672},

doi = {10.1364/OE.23.026672},

year  = {2015},

date = {2015-10-02},

journal = {Optics express},

volume = {23},

number = {20},

pages = {26672--26682},

publisher = {Optical Society of America},

keywords = {algorithms, EUV, phase imaging},

pubstate = {published},

tppubtype = {article}

}

@article{zhang2015self,

title = {Self-learning based Fourier ptychographic microscopy},

author = { Yongbing Zhang and Weixin Jiang and Lei Tian and Laura Waller and Qionghai Dai},

url = {https://doi.org/10.1364/OE.23.018471},

doi = {10.1364/OE.23.018471},

year  = {2015},

date = {2015-07-08},

journal = {Optics express},

volume = {23},

number = {14},

pages = {18471--18486},

publisher = {Optical Society of America},

keywords = {experimental design, FPM, high-resolution},

pubstate = {published},

tppubtype = {article}

}

@article{liu20153d,

title = {3D imaging in volumetric scattering media using phase-space measurements},

author = { Hsiou-Yuan Liu and Eric Jonas and Lei Tian and Jingshan Zhong and Benjamin Recht and Laura Waller},

url = {https://doi.org/10.1364/OE.23.014461},

doi = {10.1364/OE.23.014461},

year  = {2015},

date = {2015-05-22},

journal = {Optics express},

volume = {23},

number = {11},

pages = {14461--14471},

publisher = {Optical Society of America},

keywords = {3D imaging, multiple-scattering, phase space},

pubstate = {published},

tppubtype = {article}

}

@article{phillips2015multi,

title = {Multi-contrast imaging and digital refocusing on a mobile microscope with a domed LED array},

author = { Zachary F Phillips and Michael V D'Ambrosio and Lei Tian and Jared J Rulison and Hurshal S Patel and Nitin Sadras and Aditya V Gande and Neil A Switz and Daniel A Fletcher and Laura Waller},

url = {https://doi.org/10.1371/journal.pone.0124938

},

doi = {10.1371/journal.pone.0124938},

year  = {2015},

date = {2015-05-13},

journal = {PloS one},

volume = {10},

number = {5},

publisher = {Public Library of Science},

keywords = {3D imaging, CellScope, LED array, multi-contrast, phase imaging},

pubstate = {published},

tppubtype = {article}

}

@article{ma2015motion,

title = {Motion deblurring with temporally coded illumination in an LED array microscope},

author = { Chenguang Ma and Ziji Liu and Lei Tian and Qionghai Dai and Laura Waller},

url = {https://doi.org/10.1364/OL.40.002281},

doi = {10.1364/OL.40.002281},

year  = {2015},

date = {2015-05-07},

journal = {Optics letters},

volume = {40},

number = {10},

pages = {2281--2284},

publisher = {Optical Society of America},

keywords = {algorithms, coded illumination, LED array, motion deblur},

pubstate = {published},

tppubtype = {article}

}

@article{tian2015quantitativeb,

title = {Quantitative differential phase contrast imaging in an LED array microscope},

author = { Lei Tian and Laura Waller},

url = {https://doi.org/10.1364/OE.23.011394},

doi = {10.1364/OE.23.011394},

year  = {2015},

date = {2015-04-22},

journal = {Optics express},

volume = {23},

number = {9},

pages = {11394--11403},

publisher = {Optical Society of America},

keywords = {DPC, LED array, partial coherence, phase imaging, real-time},

pubstate = {published},

tppubtype = {article}

}

@article{zuo2015transport,

title = {Transport of intensity phase retrieval and computational imaging for partially coherent fields: The phase space perspective},

author = { Chao Zuo and Qian Chen and Lei Tian and Laura Waller and Anand Asundi},

url = {https://doi.org/10.1016/j.optlaseng.2015.03.006},

doi = {10.1016/j.optlaseng.2015.03.006},

year  = {2015},

date = {2015-03-06},

journal = {Optics and Lasers in Engineering},

volume = {71},

pages = {20--32},

publisher = {Elsevier},

keywords = {partial coherence, phase from defocus, phase imaging, phase space, TIE},

pubstate = {published},

tppubtype = {article}

}

@article{tian20153db,

title = {3D intensity and phase imaging from light field measurements in an LED array microscope},

author = { Lei Tian and Laura Waller},

url = {https://doi.org/10.1364/OPTICA.2.000104},

doi = {10.1364/OPTICA.2.000104},

year  = {2015},

date = {2015-01-28},

journal = {optica},

volume = {2},

number = {2},

pages = {104--111},

publisher = {Optical Society of America},

keywords = {3D imaging, algorithms, FPM, LED array, light field},

pubstate = {published},

tppubtype = {article}

}

@article{jingshan2015partially,

title = {Partially coherent phase imaging with simultaneous source recovery},

author = {Zhong Jingshan and Lei Tian and Justin Dauwels and Laura Waller},

url = {https://doi.org/10.1364/BOE.6.000257},

doi = {10.1364/BOE.6.000257},

year  = {2014},

date = {2014-12-23},

journal = {Biomedical optics express},

volume = {6},

number = {1},

pages = {257--265},

publisher = {Optical Society of America},

keywords = {partial coherence, phase from defocus, phase imaging, self-calibration},

pubstate = {published},

tppubtype = {article}

}

@article{shanker2014transport,

title = {Transport of intensity phase imaging in the presence of curl effects induced by strongly absorbing photomasks},

author = { Aamod Shanker and Lei Tian and Martin Sczyrba and Brid Connolly and Andrew R Neureuther and Laura Waller},

url = {https://doi.org/10.1364/AO.53.0000J1},

doi = {10.1364/AO.53.0000J1},

year  = {2014},

date = {2014-10-23},

journal = {Applied optics},

volume = {53},

number = {34},

pages = {J1--J6},

publisher = {Optical Society of America},

keywords = {algorithms, EUV, physics-based, TIE},

pubstate = {published},

tppubtype = {article}

}

@article{zhu2014low,

title = {Low-noise phase imaging by hybrid uniform and structured illumination transport of intensity equation},

author = { Yunhui Zhu and Aamod Shanker and Lei Tian and Laura Waller and George Barbastathis},

url = {https://doi.org/10.1364/OE.22.026696},

doi = {10.1364/OE.22.026696},

year  = {2014},

date = {2014-10-21},

journal = {Optics express},

volume = {22},

number = {22},

pages = {26696--26711},

publisher = {Optical Society of America},

keywords = {phase imaging, structured illumination, TIE},

pubstate = {published},

tppubtype = {article}

}

@article{liu2014real,

title = {Real-time brightfield, darkfield, and phase contrast imaging in a light-emitting diode array microscope},

author = { Ziji Liu and Lei Tian and Sijia Liu and Laura Waller},

url = {https://doi.org/10.1117/1.JBO.19.10.106002},

doi = {10.1117/1.JBO.19.10.106002},

year  = {2014},

date = {2014-10-01},

journal = {Journal of biomedical optics},

volume = {19},

number = {10},

pages = {106002},

publisher = {International Society for Optics and Photonics},

keywords = {LED array, multi-contrast, real-time},

pubstate = {published},

tppubtype = {article}

}

@article{tian2014multiplexed,

title = {Multiplexed coded illumination for Fourier Ptychography with an LED array microscope},

author = { Lei Tian and Xiao Li and Kannan Ramchandran and Laura Waller},

url = {https://doi.org/10.1364/BOE.5.002376},

doi = {10.1364/BOE.5.002376},

year  = {2014},

date = {2014-06-19},

journal = {Biomedical optics express},

volume = {5},

number = {7},

pages = {2376--2389},

publisher = {Optical Society of America},

keywords = {algorithms, experimental design, FPM, high-resolution, high-throughput, LED array, multiplexed illumination},

pubstate = {published},

tppubtype = {article}

}

@article{jingshan2014transport,

title = {Transport of intensity phase imaging by intensity spectrum fitting of exponentially spaced defocus planes},

author = { Zhong Jingshan and Rene A Claus and Justin Dauwels and Lei Tian and Laura Waller},

url = {https://doi.org/10.1364/OE.22.010661},

doi = {10.1364/OE.22.010661},

year  = {2014},

date = {2014-04-25},

journal = {Optics express},

volume = {22},

number = {9},

pages = {10661--10674},

publisher = {Optical Society of America},

keywords = {experimental design, phase from defocus, phase imaging, TIE},

pubstate = {published},

tppubtype = {article}

}

@article{tian20143d,

title = {3D differential phase-contrast microscopy with computational illumination using an LED array},

author = { Lei Tian and Jingyan Wang and Laura Waller},

url = {https://doi.org/10.1364/OL.39.001326},

doi = {10.1364/OL.39.001326},

year  = {2014},

date = {2014-02-28},

journal = {Optics letters},

volume = {39},

number = {5},

pages = {1326--1329},

publisher = {Optical Society of America},

keywords = {3D imaging, DPC, LED array, phase imaging},

pubstate = {published},

tppubtype = {article}

}

@article{jingshan2013sparse,

title = {Sparse ACEKF for phase reconstruction},

author = { Zhong Jingshan and Justin Dauwels and Manuel A Vázquez and Laura Waller},

url = {https://doi.org/10.1364/OE.21.018125},

doi = {10.1364/OE.21.018125},

year  = {2013},

date = {2013-07-22},

journal = {Optics express},

volume = {21},

number = {15},

pages = {18125--18137},

publisher = {Optical Society of America},

keywords = {algorithms, phase from defocus, phase imaging},

pubstate = {published},

tppubtype = {article}

}