Conference papers

@inproceedings{eckert2020physics,

title = {Physics-based learning for measurement diversity in 3D refractive index microscopy},

author = { Regina Eckert and Michael Kellman and Laura Waller},

url = {https://doi.org/10.1117/12.2543402},

year  = {2020},

date = {2020-03-09},

booktitle = {Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXVII},

volume = {11245},

pages = {112450X},

organization = {International Society for Optics and Photonics},

keywords = {3D imaging, experimental design, learning-based, measurement diversity, phase imaging, pupil coding},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{ersumo2020design,

title = {Design framework for high-speed 3D scanning tools and development of an axial focusing micromirror-based array},

author = { Nathan Tessema Ersumo and Cem Yalcin and Nick Antipa and Nicolas C Pégard and Laura Waller and Daniel Lopez and Rikky Muller},

url = {https://doi.org/10.1117/12.2550994},

doi = {10.1117/12.2550994},

year  = {2020},

date = {2020-02-28},

booktitle = {MOEMS and Miniaturized Systems XIX},

volume = {11293},

pages = {1129303},

organization = {International Society for Optics and Photonics},

keywords = {3D imaging, digital holography, experimental design},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{zhang20203d,

title = {3D fluorescence deconvolution with deep priors},

author = { Kevin Zhang and Michael Kellman and Emrah Bostan and Laura Waller},

year  = {2020},

date = {2020-02-03},

booktitle = {Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXVII},

volume = {11245},

pages = {112450N},

organization = {International Society for Optics and Photonics},

keywords = {3D imaging, deconvolution, fluorescence imaging, learning-based},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{Cao:20b,

title = {3D Differential Phase Contrast Microscopy with Axial Motion Deblurring},

author = {Ruiming Cao and Michael Kellman and David Ren and Laura Waller},

url = {http://www.osapublishing.org/abstract.cfm?URI=COSI-2020-CF4C.2},

year  = {2020},

date = {2020-01-01},

booktitle = {Imaging and Applied Optics Congress},

journal = {Imaging and Applied Optics Congress},

pages = {CF4C.2},

publisher = {Optical Society of America},

abstract = {We demonstrate 3D phase imaging using asymmetric illumination patterns and defocused intensity measurements taken with continuous axial motion. The sample's 3D refractive index is reconstructed with a motion-corrected transfer function.},

keywords = {3D imaging, Deblurring; Optical depth; Phase contrast; Refractive index; Stochastic gradient descent; Three dimensional imaging, DPC, LED array},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{wells2019characterizing,

title = {Characterizing the feeding current of sessile microorganisms using digital holography},

author = { Matthew Wells and Jesus Deloya Garcia and Shwetadwip Chowdhury and Michael Kellman and Laura Waller and Rachel Pepper},

url = {https://ui.adsabs.harvard.edu/abs/2019APS..DFDN05082W/abstract},

year  = {2019},

date = {2019-11-01},

booktitle = {APS Division of Fluid Dynamics },

journal = {APS},

volume = {Fall 2019},

number = {NP05--082},

abstract = {Microscopic sessile suspension feeders (MSSFs) are single-celled organisms that live attached to surfaces in freshwater and marine environments. MSSFs generate a feeding current to consume bacteria and debris. They play a vital role in aquatic ecosystems of moving carbon up the food chain. Therefore, characterizing MSSF feeding flow is important for understanding their role in the environment. MSSF feeding flows have only been viewed in 2D and often with samples pressed between two coverslips that distort the flow. However, calculations predict the feeding current forms recirculating eddies when the MSSF body is oriented perpendicular to the surface of attachment. These eddies reduce feeding rate, and as the MSSF tends toward a parallel orientation it is predicted that the eddies disappear. Here we test those predictions by measuring 3D flow around individual Vorticella. Vorticellaare a common and representative MSSF. We use digital holography to record 3D videos of Vorticella in water seeded with 5-10 μm spherical flow tracers. We then use Particle Tracking Velocimetry to find fluid velocity from particle trajectories. },

keywords = {3D imaging, digital holography, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{eckert2019pupil,

title = {Pupil coding for increased measurement diversity in 3D Fourier ptychography},

author = { Regina Eckert and David Ren and Michael Chen and Emrah Bostan and Laura Waller},

url = {https://doi.org/10.1364/COSI.2019.CW3A.1},

year  = {2019},

date = {2019-06-24},

booktitle = {Computational Optical Sensing and Imaging},

pages = {CW3A--1},

organization = {Optical Society of America},

keywords = {3D imaging, measurement diversity, phase imaging, pupil coding},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{yanny2019miniature,

title = {Miniature 3D fluorescence microscope using random microlenses},

author = { Kyrollos Yanny and Nick Antipa and Ren Ng and Laura Waller},

url = {https://www.osapublishing.org/abstract.cfm?uri=BRAIN-2019-BT3A.4},

year  = {2019},

date = {2019-04-14},

booktitle = {Optics and the Brain},

pages = {BT3A--4},

organization = {Optical Society of America},

keywords = {3D imaging, diffuser, fluorescence imaging, lensless imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{liu2019single,

title = {Single-shot 3D fluorescence microscopy with Fourier DiffuserCam},

author = { Fanglin Linda Liu and Vaishnavi Madhavan and Nick Antipa and Grace Kuo and Saul Kato and Laura Waller},

url = {https://doi.org/10.1364/NTM.2019.NS2B.3},

doi = {10.1364/NTM.2019.NS2B.3},

year  = {2019},

date = {2019-04-14},

booktitle = {Novel Techniques in Microscopy},

pages = {NS2B--3},

organization = {Optical Society of America},

keywords = {3D imaging, diffuser, fluorescence imaging, neural imaging, single-shot},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{eckert20193d,

title = {3D phase imaging for thick biological samples},

author = { Regina Eckert and Michael Chen and Li-Hao Yeh and Laura Waller},

url = {https://doi.org/10.1117/12.2516567},

year  = {2019},

date = {2019-03-13},

booktitle = {Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXVI},

volume = {10883},

pages = {108830V},

organization = {International Society for Optics and Photonics},

keywords = {3D imaging, measurement diversity, multiple-scattering, phase imaging, pupil coding},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{zimmerman2019stereo,

title = {Stereo in-line holographic digital microscope},

author = { Thomas Zimmerman and Nick Antipa and Daniel Elnatan and Alessio Murru and Sujoy Biswas and Vito Pastore and Mayara Bonani and Laura Waller and Jennifer Fung and Gianni Fenu and others},

url = {https://doi.org/10.1117/12.2509033},

doi = {10.1117/12.2509033},

year  = {2019},

date = {2019-02-21},

booktitle = {Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXVI},

volume = {10883},

pages = {1088315},

organization = {International Society for Optics and Photonics},

keywords = {3D imaging, digital holography, lensless imaging, on-chip},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{kuo20183d,

title = {3D fluorescence microscopy with DiffuserCam},

author = { Grace Kuo and Nick Antipa and Ren Ng and Laura Waller},

url = {https://doi.org/10.1364/COSI.2018.CM3E.3},

doi = {10.1364/COSI.2018.CM3E.3},

year  = {2018},

date = {2018-06-25},

booktitle = {Computational Optical Sensing and Imaging},

pages = {CM3E--3},

organization = {Optical Society of America},

keywords = {3D imaging, diffuser, fluorescence imaging, lensless imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{chowdhury2018high,

title = {High-resolution 3D Phase Microscopy from Intensity},

author = { Shwetadwip Chowdhury and Regina Eckert and Michael Chen and Laura Waller},

url = {https://doi.org/10.1364/MICROSCOPY.2018.MF3A.5},

year  = {2018},

date = {2018-04-03},

booktitle = {Microscopy Histopathology and Analytics},

pages = {MF3A--5},

organization = {Optical Society of America},

keywords = {3D imaging, high-resolution, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{eckert3d,

title = {3D Fourier ptychography in scattering media},

author = { Regina Eckert and Yasaman Daghighi and Hayden Taylor and Laura Waller},

url = {http://www.focusonmicroscopy.org/2018/PDF/1127_Eckert.pdf},

year  = {2018},

date = {2018-03-25},

booktitle = {Focus on Microscopy Proceedings},

organization = {Focus on Microscopy},

keywords = {3D imaging, FPM, multiple-scattering},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{waller20173db,

title = {3D computational microscopy of dynamic samples},

author = { Laura Waller},

url = {https://dc.engconfintl.org/biotech_med_xv/28/},

year  = {2017},

date = {2017-07-23},

booktitle = {Advances in Optics for Biotechnology, Medicine and Surgery XV},

publisher = {ECI Symposium Series},

keywords = {3D imaging, high-throughput},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{yeh20173d,

title = {3D structured illumination microscopy with unknown patterns and a statistical prior},

author = { Li-Hao Yeh and Nicole A Repina and Laura Waller},

url = {https://doi.org/10.1364/3D.2017.DW2F.3},

doi = {10.1364/3D.2017.DW2F.3},

year  = {2017},

date = {2017-06-26},

booktitle = {3D Image Acquisition and Display: Technology, Perception and Applications},

pages = {DW2F--3},

organization = {Optical Society of America},

keywords = {3D imaging, algorithms, self-calibration, structured illumination},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{tian2017computational,

title = {Computational microscopy: illumination coding and nonlinear optimization enables gigapixel 3D phase imaging},

author = { Lei Tian and Li-hao Yeh and Regina Eckert and Laura Waller},

url = {https://doi.org/10.1109/ICASSP.2017.7953353},

year  = {2017},

date = {2017-06-19},

booktitle = {2017 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)},

pages = {6225--6229},

organization = {IEEE},

keywords = {3D imaging, algorithms, FPM, high-throughput, LED array, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{yeh20163d,

title = {3D super-resolution optical fluctuation imaging (3D-SOFI) with speckle illumination},

author = { Li-Hao Yeh and Laura Waller},

url = {https://doi.org/10.1364/COSI.2016.CW5D.2},

doi = {10.1364/COSI.2016.CW5D.2},

year  = {2016},

date = {2016-07-25},

booktitle = {Computational Optical Sensing and Imaging},

pages = {CW5D--2},

organization = {Optical Society of America},

keywords = {3D imaging, fluorescence imaging, high-resolution, structured illumination},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{tian2016high,

title = {High-speed gigapixel and 3D phase microscopy using coded illumination },

author = { Lei Tian and Laura Waller},

url = {https://doi.org/10.1117/12.2220312},

year  = {2016},

date = {2016-07-01},

booktitle = {Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXIII},

volume = {9713},

pages = {97130T},

organization = {International Society for Optics and Photonics},

keywords = {3D imaging, high-throughput, LED array, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{tian20153dc,

title = {3D Fourier Ptychographic imaging from light field measurements in an LED array microscope},

author = { Lei Tian and Laura Waller},

url = {https://doi.org/10.1364/COSI.2015.CT3F.2},

year  = {2015},

date = {2015-06-07},

booktitle = {Computational Optical Sensing and Imaging},

pages = {CT3F--2},

organization = {Optical Society of America},

keywords = {3D imaging, FPM, LED array, light field, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{waller20153d,

title = {3D Phase Retrieval with Computational Illumination},

author = { Laura Waller and Lei Tian},

url = {https://doi.org/10.1364/COSI.2015.CW4E.1},

year  = {2015},

date = {2015-06-07},

booktitle = {Computational Optical Sensing and Imaging},

pages = {CW4E--1},

organization = {Optical Society of America},

keywords = {3D imaging, LED array, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{waller2015high,

title = {High resolution 3D computational imaging in scattering media},

author = { Laura Waller and Hsiou-Yuan Liu and Lei Tian},

url = {https://doi.org/10.1364/FIO.2015.FTh1F.1},

year  = {2015},

date = {2015-06-07},

booktitle = {Frontiers in Optics},

pages = {FTh1F--1},

organization = {Optical Society of America},

keywords = {3D imaging, high-resolution, multiple-scattering},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{hu2015x,

title = {X-ray phase imaging and computed tomography with sandpaper analyzer},

author = { Yao Hu and Michael Chen and Li-Hao Yeh and Dilworth Parkinson and Aamod Shanker and Alastair MacDowell and Laura Waller},

url = {https://doi.org/10.1364/COSI.2015.CM3E.6},

doi = {10.1364/COSI.2015.CM3E.6},

year  = {2015},

date = {2015-06-07},

booktitle = {Computational Optical Sensing and Imaging},

pages = {CM3E--6},

organization = {Optical Society of America},

keywords = {3D imaging, algorithms, phase imaging, x-ray},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{waller2015phase,

title = {Phase microscopy and 3D imaging with partially coherent light},

author = { Laura Waller and Lei Tian and Zhong Jingshan and Paroma Varma},

url = {https://doi.org/10.1364/NTM.2015.NW3C.1},

doi = {10.1364/NTM.2015.NW3C.1},

year  = {2015},

date = {2015-04-12},

booktitle = {Novel Techniques in Microscopy},

pages = {NW3C--1},

organization = {Optical Society of America},

keywords = {3D imaging, high-resolution, partial coherence, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{waller2014coherenceb,

title = {Coherence engineering},

author = { Laura Waller and Lei Tian and Ziji Liu},

url = {https://doi.org/10.1109/WIO.2014.6933284},

doi = {10.1109/WIO.2014.6933284},

year  = {2014},

date = {2014-07-07},

booktitle = {2014 13th Workshop on Information Optics (WIO)},

pages = {1--3},

organization = {IEEE},

keywords = {3D imaging, coherence engineering, FPM, LED array, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{tian2014computational,

title = {Computational illumination for 3D differential phase contrast imaging},

author = { Lei Tian and Jingyan Wang and Laura Waller},

url = {https://doi.org/10.1364/COSI.2014.CM4C.4},

doi = {10.1364/COSI.2014.CM4C.4},

year  = {2014},

date = {2014-06-22},

booktitle = {Computational Optical Sensing and Imaging},

pages = {CM4C--4},

organization = {Optical Society of America},

keywords = {3D imaging, DPC, LED array, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}