Conference papers

@inproceedings{9466260,

title = {Depth from Defocus as a Special Case of the Transport of Intensity Equation},

author = {Emma Alexander and Leyla A Kabuli and Oliver S Cossairt and Laura Waller},

doi = {10.1109/ICCP51581.2021.9466260},

year  = {2021},

date = {2021-01-01},

booktitle = {2021 IEEE International Conference on Computational Photography (ICCP)},

pages = {1-13},

keywords = {coherence, fluorescence imaging, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{10.1117/12.2552967,

title = {Quantitative phase retrieval for EUV photomasks},

author = {Stuart Sherwin and Isvar Cordova and Ryan Miyakawa and Laura Waller and Andrew Neureuther and Patrick Naulleau},

editor = {Nelson M Felix and Anna Lio},

url = {https://doi.org/10.1117/12.2552967},

doi = {10.1117/12.2552967},

year  = {2020},

date = {2020-03-23},

booktitle = {Extreme Ultraviolet (EUV) Lithography XI},

volume = {11323},

pages = {234 -- 243},

publisher = {SPIE},

organization = {International Society for Optics and Photonics},

keywords = {algorithms, EUV, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{eckert2020physics,

title = {Physics-based learning for measurement diversity in 3D refractive index microscopy},

author = { Regina Eckert and Michael Kellman and Laura Waller},

url = {https://doi.org/10.1117/12.2543402},

year  = {2020},

date = {2020-03-09},

booktitle = {Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXVII},

volume = {11245},

pages = {112450X},

organization = {International Society for Optics and Photonics},

keywords = {3D imaging, experimental design, learning-based, measurement diversity, phase imaging, pupil coding},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{kellman2020data,

title = {Data-driven experimental design for computational imaging},

author = { Michael Kellman and Emrah Bostan and Michael Lustig and Laura Waller},

year  = {2020},

date = {2020-02-03},

booktitle = {Quantitative Phase Imaging VI},

volume = {11249},

pages = {1124916},

organization = {International Society for Optics and Photonics},

keywords = {experimental design, learning-based, LED array, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{wells2019characterizing,

title = {Characterizing the feeding current of sessile microorganisms using digital holography},

author = { Matthew Wells and Jesus Deloya Garcia and Shwetadwip Chowdhury and Michael Kellman and Laura Waller and Rachel Pepper},

url = {https://ui.adsabs.harvard.edu/abs/2019APS..DFDN05082W/abstract},

year  = {2019},

date = {2019-11-01},

booktitle = {APS Division of Fluid Dynamics },

journal = {APS},

volume = {Fall 2019},

number = {NP05--082},

abstract = {Microscopic sessile suspension feeders (MSSFs) are single-celled organisms that live attached to surfaces in freshwater and marine environments. MSSFs generate a feeding current to consume bacteria and debris. They play a vital role in aquatic ecosystems of moving carbon up the food chain. Therefore, characterizing MSSF feeding flow is important for understanding their role in the environment. MSSF feeding flows have only been viewed in 2D and often with samples pressed between two coverslips that distort the flow. However, calculations predict the feeding current forms recirculating eddies when the MSSF body is oriented perpendicular to the surface of attachment. These eddies reduce feeding rate, and as the MSSF tends toward a parallel orientation it is predicted that the eddies disappear. Here we test those predictions by measuring 3D flow around individual Vorticella. Vorticellaare a common and representative MSSF. We use digital holography to record 3D videos of Vorticella in water seeded with 5-10 μm spherical flow tracers. We then use Particle Tracking Velocimetry to find fluid velocity from particle trajectories. },

keywords = {3D imaging, digital holography, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{eckert2019pupil,

title = {Pupil coding for increased measurement diversity in 3D Fourier ptychography},

author = { Regina Eckert and David Ren and Michael Chen and Emrah Bostan and Laura Waller},

url = {https://doi.org/10.1364/COSI.2019.CW3A.1},

year  = {2019},

date = {2019-06-24},

booktitle = {Computational Optical Sensing and Imaging},

pages = {CW3A--1},

organization = {Optical Society of America},

keywords = {3D imaging, measurement diversity, phase imaging, pupil coding},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{eckert20193d,

title = {3D phase imaging for thick biological samples},

author = { Regina Eckert and Michael Chen and Li-Hao Yeh and Laura Waller},

url = {https://doi.org/10.1117/12.2516567},

year  = {2019},

date = {2019-03-13},

booktitle = {Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXVI},

volume = {10883},

pages = {108830V},

organization = {International Society for Optics and Photonics},

keywords = {3D imaging, measurement diversity, multiple-scattering, phase imaging, pupil coding},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{kellman2018motion,

title = {Motion resolved quantitative phase imaging},

author = { Michael Kellman and Zachary F Phillips and David Ren and Michael Lustig and Laura Waller},

url = {https://doi.org/10.1117/12.2300100},

doi = {10.1117/12.2300100},

year  = {2018},

date = {2018-05-15},

booktitle = {Computational Imaging III},

volume = {10669},

pages = {106690D},

organization = {International Society for Optics and Photonics},

keywords = {algorithm, high throughput, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{chowdhury2018high,

title = {High-resolution 3D Phase Microscopy from Intensity},

author = { Shwetadwip Chowdhury and Regina Eckert and Michael Chen and Laura Waller},

url = {https://doi.org/10.1364/MICROSCOPY.2018.MF3A.5},

year  = {2018},

date = {2018-04-03},

booktitle = {Microscopy Histopathology and Analytics},

pages = {MF3A--5},

organization = {Optical Society of America},

keywords = {3D imaging, high-resolution, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{phillipsmulti,

title = {Multi-Frame Motion Imaging for Optical Microscopy},

author = { Zachary F Phillips and Sarah Dean and Benjamin Recht and Laura Waller},

url = {http://www.focusonmicroscopy.org/2018/PDF/1015_Phillips.pdf},

year  = {2018},

date = {2018-03-25},

organization = {Focus on Microscopy},

keywords = {coded illumination, high-throughput, motion deblur, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{10.1117/12.2299271,

title = {Actinic EUV scatterometry for parametric mask quantification},

author = {Stuart Sherwin and Andrew Neureuther and Patrick Naulleau},

editor = {Kenneth A Goldberg},

url = {https://doi.org/10.1117/12.2299271},

doi = {10.1117/12.2299271},

year  = {2018},

date = {2018-03-19},

booktitle = {Extreme Ultraviolet (EUV) Lithography IX},

volume = {10583},

pages = {323 -- 334},

publisher = {SPIE},

organization = {International Society for Optics and Photonics},

keywords = {EUV, lithography, multiple-scattering, phase imaging, Reflectometry, Scatterometry},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{tian2017computational,

title = {Computational microscopy: illumination coding and nonlinear optimization enables gigapixel 3D phase imaging},

author = { Lei Tian and Li-hao Yeh and Regina Eckert and Laura Waller},

url = {https://doi.org/10.1109/ICASSP.2017.7953353},

year  = {2017},

date = {2017-06-19},

booktitle = {2017 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)},

pages = {6225--6229},

organization = {IEEE},

keywords = {3D imaging, algorithms, FPM, high-throughput, LED array, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{eckert2016algorithmic,

title = {Algorithmic self-calibration of illumination angles in Fourier ptychographic microscopy},

author = { Regina Eckert and Lei Tian and Laura Waller},

url = {https://doi.org/10.1364/COSI.2016.CT2D.3},

year  = {2016},

date = {2016-07-25},

booktitle = {Computational Optical Sensing and Imaging},

pages = {CT2D--3},

organization = {Optical Society of America},

keywords = {FPM, LED array, phase imaging, self-calibration},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{zhang2016nonlinear,

title = {Nonlinear optimization for partially coherent phase recovery with Abbe’s method},

author = { Jingzhao Zhang and Jingshan Zhong and Laura Waller},

url = {https://doi.org/10.1364/3D.2016.JT3A.27},

doi = {10.1364/3D.2016.JT3A.27},

year  = {2016},

date = {2016-07-25},

booktitle = {Digital Holography and Three-Dimensional Imaging},

pages = {JT3A--27},

organization = {Optical Society of America},

keywords = {algorithms, nonlinear optimization, partial coherence, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{tian2016high,

title = {High-speed gigapixel and 3D phase microscopy using coded illumination },

author = { Lei Tian and Laura Waller},

url = {https://doi.org/10.1117/12.2220312},

year  = {2016},

date = {2016-07-01},

booktitle = {Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXIII},

volume = {9713},

pages = {97130T},

organization = {International Society for Optics and Photonics},

keywords = {3D imaging, high-throughput, LED array, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{waller2015large,

title = {Large-scale phase retrieval for metrology},

author = { Laura Waller and Lei Tian and Jingshan Zhong and Ziji Liu},

url = {https://doi.org/10.1109/OMN.2015.7288880},

year  = {2015},

date = {2015-08-02},

booktitle = {2015 International Conference on Optical MEMS and Nanophotonics (OMN)},

pages = {1--2},

organization = {IEEE},

keywords = {FPM, LED array, phase from defocus, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{tian20153dc,

title = {3D Fourier Ptychographic imaging from light field measurements in an LED array microscope},

author = { Lei Tian and Laura Waller},

url = {https://doi.org/10.1364/COSI.2015.CT3F.2},

year  = {2015},

date = {2015-06-07},

booktitle = {Computational Optical Sensing and Imaging},

pages = {CT3F--2},

organization = {Optical Society of America},

keywords = {3D imaging, FPM, LED array, light field, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{waller20153d,

title = {3D Phase Retrieval with Computational Illumination},

author = { Laura Waller and Lei Tian},

url = {https://doi.org/10.1364/COSI.2015.CW4E.1},

year  = {2015},

date = {2015-06-07},

booktitle = {Computational Optical Sensing and Imaging},

pages = {CW4E--1},

organization = {Optical Society of America},

keywords = {3D imaging, LED array, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{hu2015x,

title = {X-ray phase imaging and computed tomography with sandpaper analyzer},

author = { Yao Hu and Michael Chen and Li-Hao Yeh and Dilworth Parkinson and Aamod Shanker and Alastair MacDowell and Laura Waller},

url = {https://doi.org/10.1364/COSI.2015.CM3E.6},

doi = {10.1364/COSI.2015.CM3E.6},

year  = {2015},

date = {2015-06-07},

booktitle = {Computational Optical Sensing and Imaging},

pages = {CM3E--6},

organization = {Optical Society of America},

keywords = {3D imaging, algorithms, phase imaging, x-ray},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{waller2015phase,

title = {Phase microscopy and 3D imaging with partially coherent light},

author = { Laura Waller and Lei Tian and Zhong Jingshan and Paroma Varma},

url = {https://doi.org/10.1364/NTM.2015.NW3C.1},

doi = {10.1364/NTM.2015.NW3C.1},

year  = {2015},

date = {2015-04-12},

booktitle = {Novel Techniques in Microscopy},

pages = {NW3C--1},

organization = {Optical Society of America},

keywords = {3D imaging, high-resolution, partial coherence, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{liu2015multi,

title = {Multi-mode microscopy in real-time with LED array illumination},

author = { Ziji Liu and Lei Tian and Laura Waller},

url = {https://doi.org/10.1117/12.2075951},

year  = {2015},

date = {2015-03-11},

booktitle = {Quantitative Phase Imaging},

volume = {9336},

pages = {93362M},

organization = {International Society for Optics and Photonics},

keywords = {high-resolution, LED array, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{zhong2015partially,

title = {Partially coherent phase imaging with source shapes estimation},

author = { Jingshan Zhong and Lei Tian and Justin Dauwels and Laura Waller},

url = {https://doi.org/10.1117/12.2078229},

doi = {https://doi.org/10.1117/12.2078229},

year  = {2015},

date = {2015-03-11},

booktitle = {Quantitative Phase Imaging},

volume = {9336},

pages = {93360O},

organization = {International Society for Optics and Photonics},

keywords = {algorithms, partial coherence, phase imaging, self-calibration},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{tian2015quantitative,

title = {Quantitative phase recovery from asymmetric illumination on an LED array microscope},

author = { Lei Tian and Laura Waller},

url = {https://doi.org/10.1117/12.2078286},

doi = {10.1117/12.2078286},

year  = {2015},

date = {2015-03-11},

booktitle = {Quantitative Phase Imaging},

volume = {9336},

pages = {93360A},

organization = {International Society for Optics and Photonics},

keywords = {DPC, LED array, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{waller2014coherence,

title = {Coherence engineering for phase microscopy},

author = { Laura Waller and Lei Tian},

url = {https://doi.org/10.1364/FIO.2014.FW2E.3},

doi = {10.1364/FIO.2014.FW2E.3},

year  = {2014},

date = {2014-10-19},

booktitle = {Frontiers in Optics},

pages = {FW2E--3},

organization = {Optical Society of America},

keywords = {coherence engineering, phase imaging, phase space},

pubstate = {published},

tppubtype = {inproceedings}

}

@inproceedings{tian2014illumination,

title = {Illumination coding for fast Fourier Ptychography with large field-of-view and high-resolution},

author = { Lei Tian and Laura Waller},

url = {https://doi.org/10.1364/FIO.2014.FW1E.7},

doi = {10.1364/FIO.2014.FW1E.7},

year  = {2014},

date = {2014-10-19},

booktitle = {Frontiers in Optics},

pages = {FW1E--7},

organization = {Optical Society of America},

keywords = {FPM, high-throughput, multiplexed illumination, phase imaging},

pubstate = {published},

tppubtype = {inproceedings}

}