Journal papers

@article{kellman2020memory,

title = {Memory-efficient Learning for Large-Scale Computational Imaging},

author = { Michael Kellman and Kevin Zhang and Eric Markley and Jon Tamir and Emrah Bostan and Michael Lustig and Laura Waller},

url = {https://ieeexplore.ieee.org/document/9204455},

doi = {10.1109/TCI.2020.3025735},

year  = {2020},

date = {2020-10-14},

journal = {IEEE Transactions on Computational Imaging},

volume = {6},

pages = {1403-1414},

keywords = {algorithms, computational imaging, experimental design, learning-based, LED array, memory efficient, memory-efficient, physics-based},

pubstate = {published},

tppubtype = {article}

}

@article{bostan2020deep,

title = {Deep Phase Decoder: Self-calibrating phase microscopy with an untrained deep neural network},

author = { Emrah Bostan and Reinhard Heckel and Michael Chen and Michael Kellman and Laura Waller},

url = {https://doi.org/10.1364/OPTICA.389314

https://arxiv.org/abs/2001.09803},

doi = {10.1364/OPTICA.389314},

year  = {2020},

date = {2020-05-21},

journal = {Optica},

volume = {7},

number = {6},

pages = {559-562},

keywords = {algorithms, learning-based, LED array, measurement diversity, phase imaging, physics-based, self-calibration},

pubstate = {published},

tppubtype = {article}

}

@article{pinkard2019deep,

title = {Deep learning for single-shot autofocus microscopy},

author = { Henry Pinkard and Zachary F Phillips and Arman Babakhani and Daniel A Fletcher and Laura Waller},

url = {https://www.osapublishing.org/optica/abstract.cfm?uri=optica-6-6-794},

year  = {2019},

date = {2019-06-20},

journal = {Optica},

volume = {6},

number = {6},

pages = {794--797},

publisher = {Optical Society of America},

keywords = {algorithms, high-throughput, LED array},

pubstate = {published},

tppubtype = {article}

}

@article{aidukas2019low,

title = {Low-cost, sub-micron resolution, wide-field computational microscopy using opensource hardware},

author = { Tomas Aidukas and Regina Eckert and Andrew R Harvey and Laura Waller and Pavan C Konda},

url = {https://doi.org/10.1038/s41598-019-43845-9},

year  = {2019},

date = {2019-05-15},

journal = {Scientific reports},

volume = {9},

number = {1},

pages = {1--12},

publisher = {Nature Publishing Group},

keywords = {FPM, LED array, phase imaging, self-calibration},

pubstate = {published},

tppubtype = {article}

}

@article{chen2018quantitative,

title = {Quantitative differential phase contrast (DPC) microscopy with computational aberration correction},

author = { Michael Chen and Zachary F Phillips and Laura Waller},

url = {https://doi.org/10.1364/OE.26.032888},

doi = {10.1364/OE.26.032888},

year  = {2018},

date = {2018-11-30},

journal = {Optics express},

volume = {26},

number = {25},

pages = {32888--32899},

publisher = {Optical Society of America},

keywords = {aberrations, DPC, LED array, phase imaging, self-calibration},

pubstate = {published},

tppubtype = {article}

}

@article{eckert2018efficient,

title = {Efficient illumination angle self-calibration in Fourier ptychography},

author = { Regina Eckert and Zachary F Phillips and Laura Waller},

url = {https://doi.org/10.1364/AO.57.005434},

year  = {2018},

date = {2018-06-28},

journal = {Applied Optics},

volume = {57},

number = {19},

pages = {5434--5442},

publisher = {Optical Society of America},

keywords = {algorithms, FPM, LED array, phase imaging, self-calibration},

pubstate = {published},

tppubtype = {article}

}

@article{zhong2016nonlinear,

title = {Nonlinear optimization algorithm for partially coherent phase retrieval and source recovery},

author = { Jingshan Zhong and Lei Tian and Paroma Varma and Laura Waller},

url = {https://doi.org/10.1109/TCI.2016.2571669},

doi = {10.1109/TCI.2016.2571669},

year  = {2016},

date = {2016-05-23},

journal = {IEEE Transactions on Computational Imaging},

volume = {2},

number = {3},

pages = {310--322},

publisher = {IEEE},

keywords = {algorithms, LED array, nonlinear optimization, partial coherence, phase from defocus, phase imaging},

pubstate = {published},

tppubtype = {article}

}

@article{yeh2015experimental,

title = {Experimental robustness of Fourier ptychography phase retrieval algorithms},

author = { Li-Hao Yeh and Jonathan Dong and Jingshan Zhong and Lei Tian and Michael Chen and Gongguo Tang and Mahdi Soltanolkotabi and Laura Waller},

url = {https://doi.org/10.1364/OE.23.033214},

doi = {10.1364/OE.23.033214},

year  = {2015},

date = {2015-12-16},

journal = {Optics express},

volume = {23},

number = {26},

pages = {33214--33240},

publisher = {Optical Society of America},

keywords = {algorithms, FPM, high-resolution, high-throughput, LED array, phase imaging},

pubstate = {published},

tppubtype = {article}

}

@article{tian2015computational,

title = {Computational illumination for high-speed in vitro Fourier ptychographic microscopy},

author = { Lei Tian and Ziji Liu and Li-Hao Yeh and Michael Chen and Jingshan Zhong and Laura Waller},

url = {https://doi.org/10.1364/OPTICA.2.000904},

doi = {10.1364/OPTICA.2.000904},

year  = {2015},

date = {2015-10-14},

journal = {Optica},

volume = {2},

number = {10},

pages = {904--911},

publisher = {Optical Society of America},

keywords = {FPM, high-resolution, high-throughput, in vitro imaging, LED array, phase imaging},

pubstate = {published},

tppubtype = {article}

}

@article{phillips2015multi,

title = {Multi-contrast imaging and digital refocusing on a mobile microscope with a domed LED array},

author = { Zachary F Phillips and Michael V D'Ambrosio and Lei Tian and Jared J Rulison and Hurshal S Patel and Nitin Sadras and Aditya V Gande and Neil A Switz and Daniel A Fletcher and Laura Waller},

url = {https://doi.org/10.1371/journal.pone.0124938

},

doi = {10.1371/journal.pone.0124938},

year  = {2015},

date = {2015-05-13},

journal = {PloS one},

volume = {10},

number = {5},

publisher = {Public Library of Science},

keywords = {3D imaging, CellScope, LED array, multi-contrast, phase imaging},

pubstate = {published},

tppubtype = {article}

}

@article{ma2015motion,

title = {Motion deblurring with temporally coded illumination in an LED array microscope},

author = { Chenguang Ma and Ziji Liu and Lei Tian and Qionghai Dai and Laura Waller},

url = {https://doi.org/10.1364/OL.40.002281},

doi = {10.1364/OL.40.002281},

year  = {2015},

date = {2015-05-07},

journal = {Optics letters},

volume = {40},

number = {10},

pages = {2281--2284},

publisher = {Optical Society of America},

keywords = {algorithms, coded illumination, LED array, motion deblur},

pubstate = {published},

tppubtype = {article}

}

@article{tian2015quantitativeb,

title = {Quantitative differential phase contrast imaging in an LED array microscope},

author = { Lei Tian and Laura Waller},

url = {https://doi.org/10.1364/OE.23.011394},

doi = {10.1364/OE.23.011394},

year  = {2015},

date = {2015-04-22},

journal = {Optics express},

volume = {23},

number = {9},

pages = {11394--11403},

publisher = {Optical Society of America},

keywords = {DPC, LED array, partial coherence, phase imaging, real-time},

pubstate = {published},

tppubtype = {article}

}

@article{tian20153db,

title = {3D intensity and phase imaging from light field measurements in an LED array microscope},

author = { Lei Tian and Laura Waller},

url = {https://doi.org/10.1364/OPTICA.2.000104},

doi = {10.1364/OPTICA.2.000104},

year  = {2015},

date = {2015-01-28},

journal = {optica},

volume = {2},

number = {2},

pages = {104--111},

publisher = {Optical Society of America},

keywords = {3D imaging, algorithms, FPM, LED array, light field},

pubstate = {published},

tppubtype = {article}

}

@article{liu2014real,

title = {Real-time brightfield, darkfield, and phase contrast imaging in a light-emitting diode array microscope},

author = { Ziji Liu and Lei Tian and Sijia Liu and Laura Waller},

url = {https://doi.org/10.1117/1.JBO.19.10.106002},

doi = {10.1117/1.JBO.19.10.106002},

year  = {2014},

date = {2014-10-01},

journal = {Journal of biomedical optics},

volume = {19},

number = {10},

pages = {106002},

publisher = {International Society for Optics and Photonics},

keywords = {LED array, multi-contrast, real-time},

pubstate = {published},

tppubtype = {article}

}

@article{tian2014multiplexed,

title = {Multiplexed coded illumination for Fourier Ptychography with an LED array microscope},

author = { Lei Tian and Xiao Li and Kannan Ramchandran and Laura Waller},

url = {https://doi.org/10.1364/BOE.5.002376},

doi = {10.1364/BOE.5.002376},

year  = {2014},

date = {2014-06-19},

journal = {Biomedical optics express},

volume = {5},

number = {7},

pages = {2376--2389},

publisher = {Optical Society of America},

keywords = {algorithms, experimental design, FPM, high-resolution, high-throughput, LED array, multiplexed illumination},

pubstate = {published},

tppubtype = {article}

}

@article{tian20143d,

title = {3D differential phase-contrast microscopy with computational illumination using an LED array},

author = { Lei Tian and Jingyan Wang and Laura Waller},

url = {https://doi.org/10.1364/OL.39.001326},

doi = {10.1364/OL.39.001326},

year  = {2014},

date = {2014-02-28},

journal = {Optics letters},

volume = {39},

number = {5},

pages = {1326--1329},

publisher = {Optical Society of America},

keywords = {3D imaging, DPC, LED array, phase imaging},

pubstate = {published},

tppubtype = {article}

}