Journal papers

Journal papers

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32 entries « 1 of 2 »

Emrah Bostan; Reinhard Heckel; Michael Chen; Michael Kellman; Laura Waller

Deep Phase Decoder: Self-calibrating phase microscopy with an untrained deep neural network Journal Article

In: Optica, vol. 7, no. 6, pp. 559-562, 2020.

Links | BibTeX | Tags: algorithms, learning-based, LED array, measurement diversity, phase imaging, physics-based, self-calibration

Michael Chen; David Ren; Hsiou-Yuan Liu; Shwetadwip Chowdhury; Laura Waller

Multi-layer Born multiple-scattering model for 3D phase microscopy Journal Article

In: Optica, vol. 7, no. 5, pp. 394–403, 2020.

Abstract | Links | BibTeX | Tags: 3D imaging, multiple-scattering, optical models, phase imaging

David Ren; Colin Ophus; Michael Chen; Laura Waller

A multiple scattering algorithm for three dimensional phase contrast atomic electron tomography Journal Article

In: Ultramicroscopy, vol. 208, pp. 112860, 2020.

Links | BibTeX | Tags: 3D imaging, algorithms, multiple-scattering, phase imaging, TEM

Shwetadwip Chowdhury; Michael Chen; Regina Eckert; David Ren; Fan Wu; Nicole A Repina; Laura Waller

High-resolution 3D refractive index microscopy of multiple-scattering samples from intensity images Journal Article

In: Optica, vol. 6, no. 9, pp. 1211–1219, 2019.

Links | BibTeX | Tags: 3D imaging, multiple-scattering, phase imaging

Michael Kellman; Emrah Bostan; Nicole A Repina; Laura Waller

Physics-based learned design: Optimized coded-illumination for quantitative phase imaging Journal Article

In: IEEE Transactions on Computational Imaging, vol. 5, no. 3, pp. 344–353, 2019.

Links | BibTeX | Tags: algorithm, experimental design, learning-based, phase imaging, physics-based

Colin Ophus; David Ren; Jihan Zhou; Hannah Devyldere; Michael Chen; Philipp M Pelz; Peter Ercius; Jianwei Miao; Mary C Scott; Laura Waller

3D Imaging Using HAADF-STEM and HRTEM Atomic Electron Tomography Journal Article

In: Microscopy and Microanalysis, vol. 25, no. S2, pp. 394–395, 2019.

Links | BibTeX | Tags: 3D imaging, multiple-scattering, phase imaging, TEM

Tomas Aidukas; Regina Eckert; Andrew R Harvey; Laura Waller; Pavan C Konda

Low-cost, sub-micron resolution, wide-field computational microscopy using opensource hardware Journal Article

In: Scientific reports, vol. 9, no. 1, pp. 1–12, 2019.

Links | BibTeX | Tags: FPM, LED array, phase imaging, self-calibration

Li-Hao Yeh; Shwetadwip Chowdhury; Laura Waller

Computational structured illumination for high-content fluorescence and phase microscopy Journal Article

In: Biomedical optics express, vol. 10, no. 4, pp. 1978–1998, 2019.

Abstract | Links | BibTeX | Tags: diffuser, fluorescence imaging, high-throughput, phase imaging, structured illumination, super-resolution

Michael Chen; Zachary F Phillips; Laura Waller

Quantitative differential phase contrast (DPC) microscopy with computational aberration correction Journal Article

In: Optics express, vol. 26, no. 25, pp. 32888–32899, 2018.

Links | BibTeX | Tags: aberrations, DPC, LED array, phase imaging, self-calibration

Michael Kellman; Michael Chen; Zachary F Phillips; Michael Lustig; Laura Waller

Motion-resolved quantitative phase imaging Journal Article

In: Biomedical optics express, vol. 9, no. 11, pp. 5456–5466, 2018.

Links | BibTeX | Tags: algorithm, high throughput, phase imaging

Colin Ophus; David Ren; Michael Chen; Catherine Groschner; Mary C Scott; Laura Waller

Linear and Nonlinear Reconstruction Algorithms for Atomic-Resolution Tomography Using Phase Contrast Electron Microscopy Journal Article

In: Microscopy and Microanalysis, vol. 24, no. S1, pp. 110–111, 2018.

Links | BibTeX | Tags: 3D imaging, algorithms, phase imaging, TEM

Regina Eckert; Zachary F Phillips; Laura Waller

Efficient illumination angle self-calibration in Fourier ptychography Journal Article

In: Applied Optics, vol. 57, no. 19, pp. 5434–5442, 2018.

Links | BibTeX | Tags: algorithms, FPM, LED array, phase imaging, self-calibration

Michael Chen; Lei Tian; Laura Waller

3D differential phase contrast microscopy Journal Article

In: Biomedical Optics Express, vol. 7, no. 10, pp. 3940–3950, 2016.

Links | BibTeX | Tags: 3D imaging, DPC, phase imaging

Jingshan Zhong; Lei Tian; Paroma Varma; Laura Waller

Nonlinear optimization algorithm for partially coherent phase retrieval and source recovery Journal Article

In: IEEE Transactions on Computational Imaging, vol. 2, no. 3, pp. 310–322, 2016.

Links | BibTeX | Tags: algorithms, LED array, nonlinear optimization, partial coherence, phase from defocus, phase imaging

Li-Hao Yeh; Jonathan Dong; Jingshan Zhong; Lei Tian; Michael Chen; Gongguo Tang; Mahdi Soltanolkotabi; Laura Waller

Experimental robustness of Fourier ptychography phase retrieval algorithms Journal Article

In: Optics express, vol. 23, no. 26, pp. 33214–33240, 2015.

Links | BibTeX | Tags: algorithms, FPM, high-resolution, high-throughput, LED array, phase imaging

Lei Tian; Ziji Liu; Li-Hao Yeh; Michael Chen; Jingshan Zhong; Laura Waller

Computational illumination for high-speed in vitro Fourier ptychographic microscopy Journal Article

In: Optica, vol. 2, no. 10, pp. 904–911, 2015.

Links | BibTeX | Tags: FPM, high-resolution, high-throughput, in vitro imaging, LED array, phase imaging

Rene A Claus; Patrick P Naulleau; Andrew R Neureuther; Laura Waller

Quantitative phase retrieval with arbitrary pupil and illumination Journal Article

In: Optics express, vol. 23, no. 20, pp. 26672–26682, 2015.

Links | BibTeX | Tags: algorithms, EUV, phase imaging

Zachary F Phillips; Michael V D'Ambrosio; Lei Tian; Jared J Rulison; Hurshal S Patel; Nitin Sadras; Aditya V Gande; Neil A Switz; Daniel A Fletcher; Laura Waller

Multi-contrast imaging and digital refocusing on a mobile microscope with a domed LED array Journal Article

In: PloS one, vol. 10, no. 5, 2015.

Links | BibTeX | Tags: 3D imaging, CellScope, LED array, multi-contrast, phase imaging

Lei Tian; Laura Waller

Quantitative differential phase contrast imaging in an LED array microscope Journal Article

In: Optics express, vol. 23, no. 9, pp. 11394–11403, 2015.

Links | BibTeX | Tags: DPC, LED array, partial coherence, phase imaging, real-time

Chao Zuo; Qian Chen; Lei Tian; Laura Waller; Anand Asundi

Transport of intensity phase retrieval and computational imaging for partially coherent fields: The phase space perspective Journal Article

In: Optics and Lasers in Engineering, vol. 71, pp. 20–32, 2015.

Links | BibTeX | Tags: partial coherence, phase from defocus, phase imaging, phase space, TIE

Zhong Jingshan; Lei Tian; Justin Dauwels; Laura Waller

Partially coherent phase imaging with simultaneous source recovery Journal Article

In: Biomedical optics express, vol. 6, no. 1, pp. 257–265, 2014.

Links | BibTeX | Tags: partial coherence, phase from defocus, phase imaging, self-calibration

Yunhui Zhu; Aamod Shanker; Lei Tian; Laura Waller; George Barbastathis

Low-noise phase imaging by hybrid uniform and structured illumination transport of intensity equation Journal Article

In: Optics express, vol. 22, no. 22, pp. 26696–26711, 2014.

Links | BibTeX | Tags: phase imaging, structured illumination, TIE

Zhong Jingshan; Rene A Claus; Justin Dauwels; Lei Tian; Laura Waller

Transport of intensity phase imaging by intensity spectrum fitting of exponentially spaced defocus planes Journal Article

In: Optics express, vol. 22, no. 9, pp. 10661–10674, 2014.

Links | BibTeX | Tags: experimental design, phase from defocus, phase imaging, TIE

Lei Tian; Jingyan Wang; Laura Waller

3D differential phase-contrast microscopy with computational illumination using an LED array Journal Article

In: Optics letters, vol. 39, no. 5, pp. 1326–1329, 2014.

Links | BibTeX | Tags: 3D imaging, DPC, LED array, phase imaging

Zhong Jingshan; Justin Dauwels; Manuel A Vázquez; Laura Waller

Sparse ACEKF for phase reconstruction Journal Article

In: Optics express, vol. 21, no. 15, pp. 18125–18137, 2013.

Links | BibTeX | Tags: algorithms, phase from defocus, phase imaging

32 entries « 1 of 2 »